Got the engine and trans last week. 98 5.2, 44RE, y-pipe, engine harness, and PCM from a ZJ. Picked up a few swap things the past week: PDC with harness, throttle linkage, purge solenoid, charcoal canister, and cruise stuff. So far...$560.
Stripped the PDC and harness to get rid of all of the unnecessary crap like ABS, horn, lights, etc. Only have 3 wires to the ignition, one to wire into the start circuit in the Waggy, one to wire into the stock fusebox (for rewire), fuel pump wire, overdrive button wire, purge solenoid wires, and 7 wires for the data link connector. Also kept the backup lamp wire in case I can't adapt the stock circuit. Took about 8 hours.
Got a speed sensor from a 93 Dakota for the PCM. I did notice MY Wagoneer has an 8 pulse/ revolution speed sensor for the cruise in the middle of the speedo cable. I'm thinking this may work for the Jeep PCM. I may try it just to find out.
Ordered motor mounts tonight. Need to order a radiator and a cat. Getting closer to ripping the AMC out!